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Publications
Journal Papers
Lederman, C., Joshi, A., Dinov, I., Van Horn, J. D., Vese, L., & Toga, A. A Unified Variational Volume Registration Method Based on Automatically Learned Brain Structures Journal of Mathematical Imaging and Vision (2015): 1-20.
Hilary
A Marusak, Daniella J Furman, Nisha Kuruvadi, David W Shattuck,
Shantanu H Joshi, Anand A Joshi, Amit Etkin, Moriah E Thomason, Amygdala responses to salient social cues vary with oxytocin receptor genotype in youth, Neuropsychologia, Volume 79, Part A, December 2015, Pages 1–9.
Anand A Joshi, Richard Leahy, Ramsey Badawi, Abhijit Chaudhari, Registration-based Bone Morphometry for Shape Analysis of the Bones of the Human Wrist, IEEE Trans. Med. Imag. , In press
Marusak, H.A., Kuruvadi, N., Vila, A.M., Shattuck, D.W., Joshi, S., Joshi, A.A., Jella, P.K., Thomason, M.E. Interactive effects of BDNF Val66Met genotype and trauma on limbic brain anatomy in childhood. European Child & Adolescent Psychiatry. DOI: 10.1007/s00787-015-0759-4. 2015.
Kenia Martínez, Sarah K Madsen, Anand A Joshi,
Shantanu H Joshi, Francisco J Román, Julio Villalon‐Reina, Miguel
Burgaleta, Sherif Karama, Joost Janssen, Eugenio Marinetto, Manuel
Desco, Paul M Thompson, Roberto Colom, Reproducibility
of brain‐cognition relationships using three cortical surface‐based
protocols: An exhaustive analysis based on cortical thickness, Human Brain Mapping, Vol 36 (8), pp 3227–3245, 2015.
Miao Wei, Anand A Joshi,
Mingxia Zhang, Leilei Mei, Franklin R Manis, Qinghua He, Rachel L
Beattie, Gui Xue, David W Shattuck, Richard M Leahy, Feng Xue, Suzanne
M Houston, Chuansheng Chen, Qi Dong, Zhong-Lin Lu, How age of acquisition influences brain architecture in bilinguals, Journal of Neurolinguistics, 36, 35-55, 2015.
Chitresh Bhushan, Justin P Haldar, Soyoung Choi, Anand A Joshi, David W Shattuck, Richard M Leahy, Co-registration and distortion correction of diffusion and anatomical images based on inverse contrast normalization, NeuroImage 2015 Mar 27. pii: S1053-8119(15)00245-1.
Jie Shi, Olivier Collignon, Liang Xu, Gang Wang, Yue Kang, Franco Leporé, Yi Lao, Anand A Joshi, Natasha Leporé, Yalin Wang, Impact
of early and late visual deprivation on the structure of the corpus
callosum: A study Combining Thickness profile with Surface Tensor-based
morphometry, Journal Neuroinformatics, 2015.
Niv S, Ashrafulla S, Tuvblad C, Joshi A, Raine A, Leahy R, Baker LA, Childhood EEG frontal alpha power as a predictor of adolescent antisocial behavior: A twin heritability study. Biol Psychol. 2014 Nov 29. pii: S0301-0511(14)00251-8. PDF
Assal Habibi, Beatriz Ilari, Kevin Crimi, Michael Metke, Jonas Kaplan, Anand Joshi, Richard Leahy, David Shattuck, So Young Choi, Bronte Ficek, Justin Haldar, Antonio Damasio, Hanna Damasio, An
Equal Start: Absence of Group Differences in Cognitive, Social and
Neural Measures Prior to Music or Sports Training in Children, Frontiers in Human Neuroscience, 2014.
G Prasad, AA Joshi, A Feng, AW Toga, PM Thompson, D Terzopoulos, Skull-Stripping with Machine Learning Deformable Organisms, Journal of Neuroscience Methods. 2014.
Santos
J., Chaudhari AJ, Joshi AA, Ferrero A.,Yang K., Boone JM, Badawi RD,
Non-Rigid registration of serial dedicated breast CT, longitudinal
dedicated breast CT and PET/CT images using the diffeomorphic demons
method, Physica Medica, In Press.
Chaudhari AJ, Leahy RM, Wisen BL, Lane NE, Badawi RD and Joshi AA, Global point signature for shape analysis of carpal bones, Physics in Medicine and Biology, 2014 Phys. Med. Biol. 59 961. PDF.
Bhushan C, Joshi AA, Leahy RM, Haldar JP, Improved B0-distortion correction in diffusion MRI using interlaced 1-space sampling and constrained reconstruction. Mag. Res. Med 2013, accepted. PDF
Ashrafulla S, Haldar JP, Joshi AA, Leahy RM, Canonical Granger Causality between Regions of Interest. NeuroImage, 83, 189–199. 2013. PDF
Joshi AA, Hu
H, Leahy RM, Toga
AW, Nayak K, Intra-subject
registration and atlas-based segmentation of 3D human abdominal
fat-water MRI, Journal of Magnetic Resonance
in
Imaging, 37(2):423-430. February 2013. PDF
Yang Y, Raine A, Joshi AA, Joshi S, Chang YT, Schug RA, Wheland D, Leahy R, Narr KL, Frontal information flow and connectivity in psychopathy, Br J Psychiatry. 2012, Nov 201(5):408-9. link
Yang Y, Joshi AA, Joshi SH, Baker LA, Narr KL, Raine A, Thompson PM, Damasio H, Genetic and Environmental Influences on Cortical Thickness among 14-Year-Old Twins, NeuroReport, 2012 Aug 22;23(12):702-6. PDF
Joshi SH, Cabeen RP, Joshi
AA,
Sun B, Dinov I, Narr KL, Toga AW, Woods RP, Diffeomorphic Sulcal
Mapping on the Cortex, IEEE Trans. on Med
Imaging, 2012 Jun;31(6):1195-212. PDF
Thomason ME, Dennis EL, Joshi
AA,
Joshi SH, Dinov ID, Chang C, Henry ML, Johnson RF, Thompson PM, Toga
AW, Glover GH, Van Horn JD, Gotlib IH, Resting-state fMRI can reliably
map neural
networks in children, NeuroImage 2011 Vol 55(1), pp.
165-75. PDF
Lederman C, Joshi AA,
Dinov I,
Vese L, Toga AW, Van Horn JD, The
generation of tetrahedral mesh models for neuroanatomical MRI,
NeuroImage 2011, Vol 55(1), pp. 153-164. [Featured
on the Cover Page] [Featured
tool/resource on www.nitrc.org].
Joshi AA,
Lepore N,Joshi SH, Lee AD, Barysheva M, Stein JL, McMahon KL, Johnson
K, de Zubicaray GI, Martin NG, Wright MJ, Toga AW, Thompson PM, The contribution of genes to
cortical
thickness and volume, NeuroReport. 22(3):101-105, 2011. PDF.
Bernstein LE, Jiang J, Pantazis D, Lu ZL, Joshi AA, Visual phonetic processing
localized using
speech and nonspeech face gestures in video and point-light displays,
Hum Brain Mapp 2011, 32(10), pages 1660–1676. PDF
Lederman C, Joshi
AA, Dinov
I, Van-Horn J, Chan K, Vese L, Toga AW, Automatic Structural Brain
Registration
Using Finite Elements and Active Surfaces, submitted to Computer Vision
and Image
Understanding, 2012.
Chaudhari AJ, Bowen SL, Burkett GW, Packard NJ, Joshi AA, Naguwa
SM, Shelton DK, Hunter JC, Boone JM, Buonocore
MH, Badawi RD, High-resolution
(18)F-FDG PET with MRI for monitoring response to treatment in
rheumatoid arthritis, European Journal of
Nuclear Medicine
and Molecular
Imaging, ;37(5):1047,
Selected as **Image
of the Month** 2010.
Dutta J, Ahn S, Joshi AA,
Leahy RM, Illumination Pattern Optimization for Fluorescence
Tomography, Physics in Medicine and Biology. 2010; 55(10): 2961-82. PDF
Joshi AA, Chaudhari AJ, Li C, Dutta J, Cherry SR, Shattuck
DW,
Toga AW and Leahy RM, DigiWarp:
a
method for deformable mouse atlas warping to surface topographic data,
Phys Med Biol. 2010; 55(20):6197-214. PDF
Pantazis D, Joshi AA,
Jintao J, Shattuck DW, Bernstein LE,
Damasio H, and Leahy RM, Comparison
of landmark-based and
automatic methods for cortical surface registration, NeuroImage,
Vol. 49(3), pp 2479-2493, 2009. PDF
Shattuck DW,
Joshi AA,
Pantazis D, Kan E, Dutton RA, Sowell ER, Thompson PM, Toga AW, Leahy
RM, Semi-automated
method for delineation of landmarks on models of the cerebral cortex,
Journal of Neuroscience Methods, Vol. 178(2), pp. 385-392,
2009. PDF
Chaudhari AJ, Joshi AA,
Bowen SL, Leahy RM, Cherry SR and Badwai RD, Spatial distortion correction
and crystal identification for position-sensitive avalanche
photodiode-based PET scanners, IEEE Trans. on
Nuclear Science, Vol . 56(3), pp. 549-556 2009. PDF
Chaudhari AJ*, Joshi AA*,
Bowen SL, Leahy RM, Cherry SR and Badwai RD, Crystal Identification in
Positron Emission Tomography using nonrigid registration to a
Fourier-based template, Physics in
Medicine and Biology Vol. 53 (18), pp. 5011-5027, 2008. [Featured Article in Physics in
Medicine and Biology]
[Featured
Article on
Medical Physics Web]. PDF
*equal contributions
Joshi AA,
Pantazis D, Li Q,
Damasio H, Shattuck DW, Toga AW, Leahy RM, Sulcal set optimization for
cortical
surface registration, Neuroimage. 2010; 50(3):950-9. PDF
Joshi AA,
Shattuck DW, Thompson PM and Leahy RM, A Parameterization-based
Numerical Method for Isotropic and Anisotropic Diffusion Smoothing on
Non-Flat Surfaces, IEEE Transactions on Image
Processing, Vol 18(6), pp. 1358-1365, Jun 2009. PDF
Joshi AA, Shattuck DW, Thompson PM, and Richard M. Leahy
(2007) Surface
Constrained Volumetric Brain Registration Using Harmonic Mappings, IEEE
Transactions on Medical Imaging, Vol. 26 (12), pp. 1657-1669.
Dec
2007. PDF
Conference
Proceedings and Abstracts
Joshi OHBM 2016
Bhushan OHBM 2016
Chong OHBM 2016
Wang I, Krishnan B, Shattuck D, Joshi A,
Leahy R, Alexopoulos A, Burgess R, Mosher J, Udayasankar U, Moosa A,
Wyllie, E, Jones S. Automated MRI Volumetric Analysis of Rasmussen's
Encephalitis, submited American Epilepsi Society Annual Meeting 2015.
Minqi Chong, Anand A Joshi,
Justin Haldar, Elizabeth DuPre, Wen-Ming Luh, David W. Shattuck, R.
Nathan Spreng, Richard M Leahy, A Group Approach to Functional Cortical
Parcellation from Resting-State fMRI, OHBM 2015.
Varadarajan D, Wamg IZ, Joshi A,
Shattuck D, Jones S, Leahy R. Detecting Focal Cortical Dysplasia using
Population-based Models of Cortical Thickness, OHBM 2015
Choi Joshi, Diffuse T1-MRI White Matter Volume Decrease in
Patients with Sickle Cell Disease, OHBM 2015
Joshi AA, Salloum R, Bhushan C, Leahy RM, Measuring Asymmetric Connectivity in the Default Mode Network,OHBM 2015.
Joshi
AA, Salloum R, Bhushan C, Leahy RM, Measuring Asymmetric
Interactions in Resting State Brain Networks, Information Processing in
Medical Imaging, 2015, 399-410.
S
Jones, I Wang, A Alexopoulos, N Al-Sharif, R Burgess, A Joshi, B
Krishnan, R Leahy, J Mosher, U Udayasankar, D Shattuck. Automated
Quantitative Assessment of Rasmussen's Encephalitis. ASNR 2015.
H Li, G. El Fakhri, A A Joshi, Q Li, An ADMM Reconstruction Algorithm for Joint Registration and Attenuation Correction in Transmission-Less Gated TOF PET, IEEE Medical Imaging Conference, 2014.
K Martínez, J Villalon-Reina, JA Pineda, D Kessel, A Joshi, K Eschenburg, N Jahanshad, FJ Román, M Burgaleta, PM Thompson, R Colom,
Individual differences in general/fluid intelligence are evoked by
functional integration and the efficiency of long-distance connections
in the brain, Personality and Individual Differences, Volume 60, Supplement, April 2014, Pages S32.
Shantanu Joshi, Roger Woods, Anand Joshi, Scott Fears, Noor Al-Sharif, Richard Leahy, David Shattuck, A statistical toolbox for BrainSuite, OHBM 2014.
Anand Joshi,
Chitresh Bhushan, David Shattuck, Richard M. Leahy, Estimation of
cortical thickness from T1-weighted MRI images using tissue fractions,
OHBM 2014.
Easswar Balasubramaniam, Anand Joshi, David Shattuck, and Richard Leahy, A PDE approach for automatic thickness estimation using partial volume classification, ISMRM 2014.
Kenia Martinez, Anand Joshi,
Sarah Madsen, Shantanu Joshi, Sherif Karama, Francisco J. Roman, Julio
Villalon-Reina, Miguel Burgaleta, Paul Thompson, Roberto Colom, Reproducibility of Brain-Cognition Relationships Using Different Cortical Surface-Based Analysis Protocols, Proc. ISBI 2014, in press.
Kristian M. Eschenburg, Julio Villalon-Reina, Neda Jahanshad, Talia M. Nir, Madelaine Daianu, Anand A. Joshi, Cassandra
D. Leonardo, Stella de Bode, Susan Y. Bookheimer, Noriko
Salamon, Paul M. Thompson, Analysis of Structural Brain Connectivity in
6 Cases of Hemispherectomy, Proc. ISBI 2014., in press.
B Bai, A Joshi, S Brandhorst, VD Longo, PS Conti, RM Leahy, A
Registration-based Segmentation Method with Application to Adiposity
Analysis of Mice MicroCT Images SPIE Medical Imaging 2013. PDF
Abhijit J. Chaudhari, Anand A. Joshi,
Richard M. Leahy, Barton L. Wise, Nancy E. Lane, Ramsey D. Badawi, and
Michael H. Buonocore, Thumb carpometacarpal joint motion and bone shape
differences by sex, Proceedings of the 1st International Thumb
Osteoarthritis Workshop, Newport, Rhode Island, USA October 25-26, 2013.
A.J. Chaudhari, A. A. Joshi,
R. M. Leahy, N. E. Lane, R. D. Badawi, and M. H. Buonocore, Sex-based
imaging biomarkers of carpal bone motion and shape in Hand
Osteoarthritis, NIH Office of Research on Women's Health Tenth Annual
Interdisciplinary Women's Health Research Symposium, Bethesda, MD, Oct
24-25, 2013. (also in JOURNAL OF WOMENS HEALTH 22 (10), 885-885).
Anand Joshi, Syed Ashrafulla, David Shattuck, Hanna Damasio, Richard Leahy, Cortical Shape Analysis using the Anisotropic Global Point Signature, MICCAI, MFCA workshop, 2013.
Dorsa Beroukhim, Matthew Konersman, Minqi Chong, Anand A Joshi, Chitresh Bhusan, David W. Shattuck, Justin P. Haldar, Richard M. Leahy, Carolee J. Winstein, Effects of rehabilitation post-stroke: DTI analysis of corticospinal tract characteristics using BrainSuite13, Society of Neuroscience 2013.
Sergul Aydore, Syed Ashrafulla, Anand A Joshi, Richard M. leahy, A Measure of Connectivity in the Presence of Crosstalk, IEEE ASILOMAR Conference on Signals, Systems and Computers, 2013.
Abhijit J Chaudhari, Anand A Joshi, Richard M Leahy, Robert D. Boutin, Barton L. Wise, Nancy E. Lane, Ramsey D. Badawi, Michael H. Buonocore, Sex-based imaging biomarkers of function in Hand Osteoarthritis, BIRCWH Annual Meeting 2013.
Dorsa
Beroukhim, Matthew Konersman, Minqi Chong, Anand A Joshi, Chitresh
Bhusan, David W. Shattuck, Justin P. Haldar, Richard M. Leahy, Carolee
J. Winstein. Effects of rehabilitation post-stroke: DTI analysis of corticospinal tract characteristics using BrainSuite13. Society for Neuroscience 2013.
Kevin Ma, Yi Qin, Ye Liu, Nakul Reddy, Anand Joshi, Lilyana Amezcua, Alex Lerner, Mark Shiroishi, Brent Liu, Knowledge discovery of potential disease patterns in multiple sclerosis lesions across imaging studies of diverse ethnicities, RSNA 2013.
Liang Xu, Olivier Collignon, Gang Wang, Yue Kang, Franco Lepore, Jie Shi, Yi Lao, Anand Joshi, Natasha Lepore, Yalin Wang, Combining
Thickness Information with Surface Tensor-based Morphometry for the 3D
Statistical Analysis of the Corpus Callosum, MICCAI, MFCA workshop 2013.
Soyoung Choi, Chitresh Bhushan, Anand A. Joshi, Kristen Raphel, Daniel Tranel, David W. Shattuck, Justin P. Haldar, Richard M. Leahy, Hanna Damasio, Jessica L. Wisnowski, Altered orbitofrontal tissue microstructure in patients with chronic anterior temporal lobe lesions, OHBM 2013.
David Shattuck, Anand Joshi,
Justin Haldar, Chitresh Bhushan, Soyoung Choi, Andrew Krause,
Jessica Wisnowski, Hanna Damasio, Arthur Toga, Richard M. Leahy,
New BrainSuite13 Tools for Image Segmentation, Registration ,
Connectivity Analysis and Visualization, OHBM 2013.
Anand Joshi, Syed Ashrafulla, David W. Shattuck, Hanna Damasio, Richard M. Leahy, Automated Analysis of the Shape of Sulcal Curves using the Anisotropic Helmholtz Equation, OHBM 2013.
Kristian Eschenburg, Julio Villalon-Reina, Talia Nir, Anand Joshi, Kevin Terashima, Michael Jones, Noriko Salamon, Stella de Bode, Paul M. Thompson, A Preliminary Graph Theory Analysis of 5 Hemispherectomized Children, OHBM 2013.
David W. Shattuck, Anand A. Joshi, Justin P. Haldar, Chitresh Bhushan, Soyoung Choi, Andrew C Krause, Jessica L. Wisnowski, Arthur W. Toga and Richard M. Leahy, Tools for Brain Image Segmentation, Registration, and Connectivity Analysis, ISMRM 2013.
Chitresh Bhushan, Anand Joshi, Richard Leahy, Justin Haldar, Accelerating
Data Acquisition for Reversed-Gradient Distortion Correction in
Diffusion MRI: A Constrained Reconstruction Approach, ISMRM 2013. [Magna Cum Laude Merit Award, Trainee Educational Stipend] PDF
Soyoung Choi, Anand A Joshi, Chitresh Bhushan, David W Shattuck, Richard M Leahy, Hanna Damasio, Ashok Panigrahy and Jessica L Wisnowski, A
Multimodal Investigation of Neuronal/Axonal Integrity Using Structural
T1-weighted Imaging, Diffusion Tensor Imaging, and H1 MR Spectroscopy, ISMRM 2013. PDF
CNS lepore
Anand Joshi, Richard Leahy, Ramsey Badawi, Abhijit Chaudhari, Morphometry for Early Monitoring of Treatment Response in Theumatoid Arthritis, Proc IEEE Int Symp Biomed Imaging. 2013: : 121–124. PDF
Kenia Martínez, Julio Villalon, Dominique Kessel, Anand Joshi,
Jose Ángel Pineda, Jahanshad, Talia Nir, Kristian Eschenburg, Francisco
J. Román, Miguel Burgaleta, Ana Beatriz Solana, M. Angeles Quiroga,
Roberto Colom, Paul M. Thompson, Explorator factor analysis of brain networks reveals sub-networks related to cognitive performance, ISBI 2013, In Press.
Lepore South american conf
Kenia Martínez, Francisco J. Román, Anand Joshi,
Francisco J. Abad, Julio Villalon, Miguel Burgaleta, Jesús Privado,
Sergio Escorial, Pei Chun Shih, M. A. Quiroga, Juan Álvarez-Linera,
Sherif Karama, Richard Haier, Paul M. Thompson and Roberto Colom,
Imaging-derived gray matter measurements of the cerebral cortex and
intelligence: A latent variable analysis of the P-FIT model. ISIR 2012.
Bhushan C, Haldar J, Joshi A,
Leahy R, Correcting Susceptibility-Induced Distortion in
Diffusion-Weighted MRI using Constrained Nonrigid Registration, APSIPA
2012.
Joshi AA, Ashrafulla S, Shattuck DW, Damasio H, Leahy RM, An Invariant Shape Representation using the Anisotropic Helmholtz Equation, Proc. MICCAI (3) 2012: 607-614. PDF
Yaling Yang, Pan Wang, Laura A. Baker, Hanna Damasio, Anand A. Joshi, Shantanu Joshi, Katherine L. Narr, Adrian Raine, and Paul M. Thompson, Abnormal cortical thickness associates with psychopathic traits in adolescents, Society for Neuroscience Annual Meeting October 13-17, 2012, in New Orleans, LA.
Ashrafulla S, Haldar JP, Joshi AA, Leahy RM, Canonical Granger Causality, Biomag 2012.
Somayajula S, Joshi AA,
Leahy RM, Non-rigid Image Registration Using Gaussian Mixture Models,
Proc. WBIR, LNCS Springer 2012, 286-295.
Joshi AA, Shattuck DW and Leahy RM, A Method for Automated Cortical Surface Registration and Labeling, Proc. WBIR LNCS Springer 2012, 180-189. PDF
Anand A Joshi, David W Shattuck and Richard M Leahy, Refinement of Automated Cortical Surface Registration and Labelling using Gradient Curvature Flow, Organization for Human Brain Mapping, Beijing, China, June 10-14, 2012. PDF
J. Villalon Reina, N. Jahanshad, A. Joshi, K. L. McMahon, G. I. de Zubicaray, M. J. Wright, A.W. Toga, R. M. Leahy, P.M. Thompson, How do cortical thickness profiles depend on thalamic connectivity? Organization for Human Brain Mapping, Beijing, China, June 10-14, 2012.
S. H. Joshi, A. A. Joshi, A. W. Toga, K. L. McMahon, G. I. de Zubicaray, N. G. Martin, M. J. Wright, and P. M. Thompson. Sulcal Shape Heritability on the Cortex, Organization for Human Brain Mapping, Beijing, China, June 10-14, 2012.
Yaling Yang, Pan Wang, Laura A. Baker, Anand A. Joshi, Shantanu Joshi, Katherine L. Narr, Adrian Raine, and Paul M. Thompson, Thinner Temporal Cortex Identified in Adolescents with Increasing Psychopathy over Time, Organization for Human Brain Mapping, Beijing, China, June 10-14, 2012.
Yaling Yang, Pan Wang, Laura A. Baker, Anand A. Joshi, Shantanu Joshi, Katherine L. Narr, Adrian Raine and Paul M. Thompson, Variations in Frontal and Striatal Morphology Associate with Psychopathic Traits in Adolescents, Organization for Human Brain Mapping, Beijing, China June 10-14, 2012.
Anand Joshi, David Shattuck, Hanna Damasio, Richard Leahy, Geodesic curvature flow on surfaces for automatic sulcal delineation, Proc IEEE ISBI 2012, 430-433.
Syed Ashrafulla, Justin Haldar, Anand Joshi, Richard Leahy, Canonical Granger causality applied to functional brain data, Proc. IEEE ISBI 2012, 1751-1754. PDF
Shantanu Joshi, Anand Joshi, Arthur Toga, Katie McMahon, Greig de Zubicaray, Nicholas Martin, Margaret Wright, Paul Thompson, Genetic influences on sulcal patterns of the brain, Proc. IEEE ISBI 2012, 414-417.
Wheland D, Joshi AA, McMahon K, Hansell N, Martin N, Wright M, Thompson P, Shattuck DW, Leahy RM, Robust identification of partial-correlation based networks with applications to cortical thickness data, Proc IEEE ISBI 2012, 1551-1554.
Prasad G, Joshi A,
Feng A, Barysheva M, McMahon K, de Zubicaray G, Martin
N, Wright M, Toga AW, Terzopoulos D and Thompson PM, Deformable Organisms and Error Learning for Brain Segmentation, MICCAI MFCA 2011, 135-147. PDF
B Zingg, H Hintiryan, L Gou, D Lee, Q Ng, A Joshi, S
Yamashita, M. Bota, L Swanson, A Toga,
and H Dong, Toward a Mouse Connectome: A
High-throughput Approach for the Characterization of Long-range
Connectivity in the Mouse Brain. Janelia
farm Conference, 2011.
D Lee, Q Ng, S Yamashita, A
Joshi, B Lee, C Mena, A Toga,
and H Dong, iConnectome:
An informatics infrastructure for the processing, visualization, and
analysis for the mouse connectome project. SFN 2011.
B Zingg, H Hintiryan, L Gou, D Lee, Q Ng, A Joshi, S
Yamashita, M. Bota, L Swanson, A Toga,
and H Dong, Toward a
Mouse
Connectome: A High-throughput Approach for the Characterization of
Long-range Connectivity in the Mouse Brain.
SFN 2011.
Santos
J, Joshi A,
Chaudhari A, Badawi
R, Assessment of the advanced 3D
registration for the spatial normalization of cross-sectional and
longitudinal high-resolution breast PET/CT images, BCI 2011, hosted by
SNM center for molecular imaging 2011.
Brian Zingg, Lin Gou, Houdi Hintiryan, Daren Lee, Anand Joshi, Seita
Yamashita,
Queenie Ng, Betty W. Lee, Carlos Mena, Larry W. Swanson, Arthur W Toga,
and Hongwei Dong, Toward
a Mouse
Connectome: A High-throughput Approach for the Characterization of
Long-range Connectivity in the Mouse Brain. UCLA Neurology
science day 2011. [Mazz
Prize]
Carl Lederman, Anand
Joshi,
Ivo
Dinov, Kevin Chan, Luminita Vese, Arthur Toga, John Van Horn, A Unified
Variational Approach to Structural Brain Registration, OHBM 2011.
Anand Joshi,
Carl Lederman, Ivo
Dinov, Shantanu Joshi, Arthur Toga, John Van Horn, Tetrahedral
Mesh-based Morphometry of Brain Surfaces and Volumes, OHBM 2011.
Anand
Joshi, Shantanu Joshi, Moriah Thomason, Ivo Dinov, Arthur
Toga,
Evaluation of Connectivity Measures and Anatomical Features for
Statistical Brain Networks, OHBM 2011.
Natasha Lepore, Anand
Joshi,
Julio Villalon
Reina, Caroline Brun, James Gee, Greig de Zubicaray, Margaret Wright,
Katie McMahon, Paul Thompson, A Tensor-Based Morphometry Study of Twins
using a New Combined Surface and Volume Registration OHBM 2011.
Villalon J, Joshi AA,
Toga AW,
Thompson PM, Comparison of Volumetric Registration Algorithms for Tensor-Based Morphometry, Proc. IEEE ISBI 2011: 1536-1541. PDF
Jahanshad N, Aganj I, Lenglet C, Joshi
AA, Jin Y, Barysheva M, McMahon K, de Zubicaray G, Martin
N,
Wright M, Toga A, Sapiro G, Thompson P, Sex
Differences in the Human Connectome: 4-Tesla High Angular Resolution
Diffusion Imaging (HARDI) Tractography in 234 Young Adult Twins, Proc. IEEE ISBI 2011, 939-943. PDF
Joshi AA,
Joshi SH, Thomason M,
Dinov ID, Toga AW, Evaluation of Connectivity Measures and Anatomical Features for Statistical Brain Networks, Proc. of IEEE ISBI 2011, 836-840. PDF
Prasad G, Joshi AA,
Thompson
PM, Toga AW, Shattuck DW, Terzopoulos D, Skull-stripping with Deformable Organism, Proc. IEEE ISBI 2011, 1662-1665. PDF
Joshi SH, Cabeen R, Sun B, Joshi
AA,
Gutman B, Zamanyan A, Chakrapani S, Dinov I, Woods RP, Toga AW, Cortical Sulcal Atlas
Construction using a
Diffeomorphic Mapping Approach, Proc. of MICCAI. 2010; 13
(Pt
1):357-366. PDF
Joshi SH, Cabeen R, Joshi
AA,
Narr K, Toga AW, Diffeomorphic
Sulcal Shape Analysis for Cortical Surface Registration,
Proc.
CVPR 2010; 475-482. PDF
Thomason ME, Dennis EL, Joshi
AA,
Joshi SH, Dinov ID, Henry ML, Johnson RF, Thompson PM, Toga AW, Gotlib
IH, Resting Functional
Connectivity:
Pattern reliability and longitudinal changes in childhood,
OHBM
2010.
Lepore N, Joshi AA.
Brun C,
Toga AW, Thompson PM, Combined
Surface/Volume Fluid Registration - Performance Evaluation using Brain
MRIs from 342 Adults, OHBM 2010.
Joshi AA,
Lepore N, Joshi SH, Brun C, Toga AW, The
Contribution of Genes to Cortical Thickness and Volume in
Young
Adults, OHBM 2010.
Brun C, Joshi AA,
Lepore N,
Joshi SH, Lee A, Thompson PM,
Cortical measures and heritability in 326 identical and fraternal twins,
OHBM 2010.
Joshi
AA, Hu HH, Goran MI, Leahy RM, Toga AW, Nayak KS, A
Software Tool for
Volume Registration and Atlas-Based Segmentation of Human Fat-Water MRI
Data in Longitudinal Studies, ISMRM 2010.
Lederman C, Joshi AA,
Van Horn
JD, Vese L, Toga A,
Robust
Tetrahedral Mesh Generation for Medical Images using Active Surfaces,
Proc. of IEEE ISBI 2010; 436-439.
Joshi AA,
Joshi SH, Dinov I,
Shattuck DW, Leahy RM, Toga AW, Anatomical
Structural Network Analysis of Human Brain using Partial Correlation of
Gray Matter Volumes, Proc. of IEEE ISBI. 2010; 844-847. [Tutorial Award].
Joshi AA,
Lepore N, Joshi SH,
Lee AD, Barysheva M, de Zubicaray GI, Wright MJ, McMahon KL, Toga AW,
Thompson PM, Genetic
Analysis of
Cortical Thickness in 372 twins, Proc. of IEEE ISBI 2010; 101-104.
Joshi AA,
Joshi SH, Leahy RM,
Shattuck DW, Dinov I, Toga AW, Bayesian
approach for network modeling of brain structural features,
Proc. SPIE. 2010; Vol. 7626, 762607.
Lepore N, Joshi AA,
Leahy RM, Brun CC, Chou YY, Pennec X, Lee AD, Barysheva M, de Zubicaray
GI, Wright MJ, McMahon KL, Toga AW, New
Combined Surface and Volume Registration, Proc.
of the SPIE 2010, Volume 7623, pp. 76231E-76231E-9.
Chaudhari AJ, Joshi
AA,
Toga AW, Leahy RM, Cherry SR and Badawi RD Atlas-based attenuation
correction for small animal PET/MRI scanners, IEEE Medical
Imaging Conference, 2009. PDF
Dutta J, Ahn S, Joshi AA
and Leahy RM, Optimal
Illumination Patterns for Fluorescence Tomography, to
appear in Proc. of IEEE ISBI 2009, 1275-1278. [Travel Award] PDF
Joshi AA,
Chaudhari AJ, Shattuck DW, Dutta J, Leahy RM and Toga AW, Posture Matching and Elastic
Registration of a Mouse Atlas to Surface Topography Range Data,
to appear in Proc. of IEEE ISBI 2009, 366-369. PDF
Joshi AA, Leahy RM, Toga AW, Shattuck DW, A Framework for Brain
Registration via Simultaneous Surface and Volume Flow,
Proc. of
IPMI 2009, LNCS Vol 5636, . PDF
Pantazis D, Joshi AA,
Jintao J, Shattuck DW, Bernstein LE,
Damasio H, and Leahy RM, Evaluating the accuracy of cortical
registration using landmark-based and automatic methods, OHBM
2009. PDF
Li Q., Shin T, Joshi AA and
Nayak K, A Fast
Simultaneous Estimation of MRI Image and
Deformation Map in Cardiac Imaging, ISMRM 2009. Poster
Joshi AA, Pantazis
D, Damasio
H, Li Q, Shattuck DW, Bernstein LE and Leahy
RM, Optimization of
Landmark Selection for Cortical Surface Registration,
Proc. of
IEEE CVPR 2009, 699–706.
PDF
Chaudhari AJ, Joshi AA,
Yibao W, Leahy RM,
Cherry SR, Badawi RD, Spatial
distortion correction and
crystal identification for position-sensitive avalanche
photodiode-based PET scanners, Nuclear Science
Symposium Conference Record, 2008. NSS '08. IEEE
, pp.5045-5052, 2008. [Travel
Award] PDF
Somayajula S., Joshi AA
and Leahy RM, Mutual
Information Based Non-Rigid Mouse Registration Using a
Scale-space Approach, Proc. of IEEE ISBI, pp. 1147-1150, May
2008. [Travel Award].PDF
Vidal CN, Fox GR, Ballinger AM, Allen
J, Baker L, Raine A, Bruss J, Joshi AA, Leahy
RM, Pantazis D, Shattuck DW, Zhuang
J, Damasio H, (2007), Genetic
Influences on Language Cortices: Preliminary Results from a Volumetric
Twin Study, The Society for Neuroscience annual
meeting, San Diego, Nov 2-7, 2007. Poster
Li Q., Joshi AA
and Leahy RM, (2007), A
Registration Framework based on
Harmonic Mapping for Inter-subject Comparisons in Small Animal PET/CT
Imaging, Nuclear Science Symposium and Medical Imaging
Conference. Abstract
Poster
Joshi AA, Shattuck DW, Thompson PM. Brain
Image Registration using
Cortically Constrained Harmonic Mappings, Proc. of
IPMI 2007, Lecture Notes in Computer Science,
Vol 4584, pp. 359-371, Springer. PDF Poster
Eckstein I, Joshi AA,
Leahy RM. Deshbrun M. Generalized
Surface Flows
for Deformable Registration and Cortical Matching, MICCAI,
pp. 692-700, (2007). PDF
[Travel Award].
Joshi AA, Shattuck DW, Thompson PM, and Richard M. Leahy
(2007)
Simultaneous Surface and
Volumetric Brain Registration Using Harmonic
Maps, Proceedings of SPIE, Vol. 6498,
Computational Imaging
V,
Charles A. Bouman; Eric L. Miller; Ilya Pollak, Editors, 649816. PDF
Chaudhari AJ , Joshi AA,
Darvas F, Leahy RM. (2007) A
method for
atlas-based volumetric registration with surface constraints for
Optical Bioluminescence Tomography in small animal imaging,
Proceedings
Vol. 6510 Medical Imaging 2007: Physics of Medical Imaging, Jiang
Hsieh; Michael
J. Flynn, Editors, 651024. PDF
Joshi AA, Shattuck DW, Thompson PM, and Richard M. Leahy
(2007) A
finite element method for elastic parameterization and alignment of
cortical surfaces using sulcal constraints, Proc. of ISBI
2007,
640-643. [Travel Award
for being in
top
25 rated presentations]. PDF
Joshi AA, Shattuck DW, Thompson PM, and Richard M. Leahy
(in press)
Registration of cortical
surfaces using sulcal landmarks for group
analysis of MEG data,
International Congress Series Volume 1300, , New Frontiers in
Biomagnetism. Proceedings of the 15th International Conference on
Biomagnetism, Vancouver, BC, Canada, August 21-25, 2006, pp. 229-232,
June 2007. PDF Poster
Joshi AA, Shattuck DW, Thompson PM, Leahy RM
(2005)
A Framework for
Registration, Statistical Characterization and
Classification of Cortically Constrained Functional Imaging Data.
IPMI
2005: 186-196 [Best
student
presented poster award][Was nominated for USC EE dept gold medal for
best paper]. PDF
Poster
Shattuck DW,
Joshi AA,
Leahy RM, & Toga AW (2005) Automated
Parameterized Cortical Surface Models from MRI, Brain
Mapping June
2005, Toronto, CA.
Joshi AA,
Shattuck DW, Thompson PM, and Leahy RM (2005) Thin Plate Spline
Registration in the Intrinsic Geometry of the Cortical
Surface,
Human Brain Mapping June 2005, Toronto, CA. PDF Poster
Joshi AA, Leahy RM, Thompson PM, Shattuck DW (2004) Cortical Surface
Parameterization by P-Harmonic Energy Minimization. ISBI
2004: 428-431
[Travel Award]. PDF
Poster
Joshi AA and Leahy RM, Invariant conformal maps: Image
analysis workshop
at Los Alamos. Dec 2002. (Used mobius
transformations to get uniqueness in conformal mappings).
Technical Reports
Lepore
N, Joshi AA,
Leahy RM, Brun CC, Chou YY, Pennec X, Lee AD, Barysheva M, de Zubicaray
GI, Wright MJ, McMahon KL, Toga AW, Thompson PM (2009). Surface
and Volume Registration of Brain Magnetic Resonance Images,
4D Technical Report, April 2009 PDF.
Carl Lederman, Anand
Joshi,
Ivo
Dinov, John Darrell Van Horn, Kevin Chan, Luminita Vese and Arthur
Toga, Automatic Structural Brain Registration Using Finite Elements and
Active Surfaces, UCLA Computational and Applied Mathematics Reports,
December 2010. PDF.
Conference
Awards during my
undergraduate
Joshi AA,
Shinde G, Vision 97: Consolation
prize for 'Multipurpose 3D
editor graphics package' software competition.
Joshi AA, Shinde G, Avishkar 97: 3rd prize for 'Game of stones',
[A game
tree algorithm-based solution to a 2 player game] software competition.
Training Workshops
BrainSuite-Brainstorm Training session
USC University Park Campus, Los Angeles, October 2015.
BrainSuite
– NeuroImaging Training Program 2015 UCLA Advanced Neuroimaging Summer
Program, University of California, Los Angeles, August 2015.
NITP 2015 workshop Talk Slides
BrainSuite Training - Atlas Based Registration and Labeling and Other Tools Childrens Hospital Los Angeles Aug 19, 2014
Invited Talks
Joshi AA, Geometric methods for bran image registration and signal analysis, Centro de Investigación en Matemáticas, 2012.
Joshi AA,
Geometric
methods for brain image registration and signal analysis, University of
Southern California, Signal and Image Processing Institute, 2011.
Joshi AA,
Geometric
methods for brain image registration and signal analysis, University of
California, Los Angeles, Dept.
of Mathematics, Applied Math Colloquium: Image
processing seminars, 2010.
Joshi AA,
Geometric methods for brain image registration, University of North Carolina at
Chapel Hill,
2010.
Joshi AA, Medical
image registration and analysis, Workshop
at Children's Hospital, Los Angeles, 2009.
Joshi AA,
Geometric
methods for brain image registration, SRI
International, 2009.
Joshi AA, Medical
image registration and analysis,
DSP Experiments in MATLAB workshop at RSCOE, University of
Pune, 2009.
Joshi AA, Geometric
methods for brain image registration,
University of California, Davis, 2008.
Joshi AA,
Geometric
methods for brain image registration and signal analysis, University of
California, Los Angeles,
LONI, CCB Presents, 2008.
Joshi AA, Geometric
methods for brain image registration and signal analysis, CSAIL,
Massachusetts Institute of
Technology,
Biomedical Imaging and
Analysis Seminar Series, 2008.
Joshi AA, Simultaneous
Surface and Volume Registration using Harmonic Maps, SIAM
conference on Imaging Sciences, Minneapolis, 2006.
Thesis work
University of Southern California, Los Angeles
Dept. of Electrical Engg.
PhD Dissertation: Joshi
AA, Geometric
Methods for Image Registration and Analysis (PDF), 2008.
(Advisor: Dr.
Richard M. Leahy)
University of Southern California, Los Angeles
Dept. of Mathematics
Masters Thesis: Joshi
AA, Harmonic
Maps Between Riemannian Manifolds (PDF),
2006.
(Advisor: Dr.
Francis Bonahon)
Indian Institute of Technology, Kanpur
Dept. of Electrical Engineering
Masters Thesis: Joshi AA, Shape
Recovery in 2D, 3D
Medical Images using Level Set Method, 2000.
(Advisor:Dr.
Govind Sharma)
Shivaji University, Walchand College of Engineering, Sangli
Dept. of Electronics
Batchlor's Thesis:
Joshi AA, Speaker Verification using
Spectral
Analysis, 1997.
(Advisor:Dr.
S. D. Apte)
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